ABSTRACT
In this study, we screened differentially expressed genes in a multidrug-resistant isolate strain of Clostridium perfringens by RNA sequencing. We also separated and identified differentially expressed proteins (DEPs) in the isolate strain by two-dimensional electrophoresis (2-DE) and mass spectrometry (MS). The RNA sequencing results showed that, compared with the control strain, 1128 genes were differentially expressed in the isolate strain, and these included 227 up-regulated genes and 901 down-regulated genes. Bioinformatics analysis identified the following genes and gene categories that are potentially involved in multidrug resistance (MDR) in the isolate strain: drug transport, drug response, hydrolase activity, transmembrane transporter, transferase activity, amidase transmembrane transporter, efflux transmembrane transporter, bacterial chemotaxis, ABC transporter, and others. The results of the 2-DE showed that 70 proteins were differentially expressed in the isolate strain, 45 of which were up-regulated and 25 down-regulated. Twenty-seven DEPs were identified by MS and these included the following protein categories: ribosome, antimicrobial peptide resistance, and ABC transporter, all of which may be involved in MDR in the isolate strain of C. perfringens. The results provide reference data for further investigations on the drug resistant molecular mechanisms of C. perfringens.
Subject(s)
Animals , Bacterial Proteins/genetics , Clostridium perfringens/genetics , Sequence Analysis, RNA/methods , Genes, MDR , Drug Resistance, Multiple, Bacterial/genetics , Mass Spectrometry/methods , Bacterial Proteins/metabolism , Electrophoresis, Gel, Two-Dimensional/methods , Gene Expression Regulation, Bacterial/genetics , Genome, Bacterial/genetics , Clostridium perfringens/classification , Clostridium perfringens/drug effects , Clostridium perfringens/metabolism , DNA, Complementary , Proteome/genetics , Transcriptome/genetics , Gene OntologyABSTRACT
Abstract: Background: A key process in cell regulation is protein phosphorylation, which is catalyzed by protein kinases and phosphatases. However, phosphoproteomics studies are difficult because of the complexity of protein phosphorylation and the number of phosphorylation sites. Methods: We describe an efficient approach analyzing phosphopeptides in single, separated protein by two-dimensional gel electrophoresis. In this method, a titanium oxide (TiO2)-packed NuTip is used as a phosphopeptide trap, together with displacers as lactic acid in the loading buffer to increase the efficiency of the interaction between TiO2 and phosphorylated peptides. Results: The results were obtained from the comparison of mass spectra of proteolytic peptides of proteins with a matrix-assisted laser desorption-ionization-time of flight (MALDI-TOF) instrument. Conclusions: This method has been applied to identifying phosphoproteins involved in the symbiosis Rhizobium etli-Phaseolus vulgaris.
Resumen: Introducción: Un proceso clave en la regulación celular es la fosforilación de proteínas, que se lleva a cabo por cinasas y fosfatasas. Sin embargo, los estudios de fosfoproteómica son difíciles debido a la complejidad de la fosforilación proteica y el número de sitios de fosforilación. Métodos: En el presente trabajo se describe una eficiente estrategia metodológica para analizar fosfopéptidos de proteínas separadas mediante electroforesis bidimensional. En este método, una columna con microesferas de dióxido de titanio (TiO2/NuTip) se utilizó para atrapar los fosfopéptidos en la superficie del TiO2 previamente empacado en una punta. El uso de desplazadores en el buffer de carga, como el ácido láctico, mejoró significativamente la selectividad. Resultados: Los resultados se obtuvieron mediante la comparación de los espectros de masas de péptidos proteolíticos de proteínas analizados utilizando un instrumento de desorción/ionización láser asistida por matriz-tiempo de vuelo (MALDI-TOF). Conclusiones: Este método se ha aplicado para la identificación de fosfoproteínas involucradas en la simbiosis del Rhizobium etli con Phaseolus vulgaris.
Subject(s)
Phosphopeptides/analysis , Phosphoproteins/analysis , Titanium/chemistry , Chromatography, Affinity/methods , Phosphorylation , Rhizobium/metabolism , Symbiosis/physiology , Electrophoresis, Gel, Two-Dimensional/methods , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods , Phaseolus/metabolismABSTRACT
O gênero Biomphalaria possui espécies de grande relevância médica uma vez que atuam como hospedeiros intermediários naturais do parasita Schistosoma mansoni, causador da esquistossomose. Dentro desse gênero de moluscos, três espécies são tidas como hospedeiros naturais do parasita, Biomphalaria glabrata, B. straminea e B. tenagophila. O perfil de suscetibilidade à infecção por S. mansoni dentro do gênero é muito variado e muitas pesquisas buscam elucidar a dinâmica da relação parasita-hospedeiro intermediário na finalidade de criar novas medidas de controle da doença. Por isso, esse estudo tem como objetivo determinar o perfil bidimensional de proteínas que podem estar envolvidas na resposta imune contra o S. mansoni comparando duas espécies com diferentes perfis de susceptibilidade B. glabrata, B. straminea além de uma refratária ao S. mansoni, a B. straminea R3. Para isso, os caramujos de cada espécie foram divididos em dois grupos: Infectado, expostos aos miracídios do S. mansoni; e Controle, submetidos ao estresse do processo de infecção livre de miracídios. A hemolinfa foi retirada 24 horas após a exposição. Foi feito o extrato proteico total e determinada a concentração das proteínas totais para cada grupo investigado. As proteínas foram separadas por eletroforese bidimensional onde foi obtido o ponto isoelétrico e peso molecular de todos os spots nos géis...
The Biomphalaria has species of great medical relevance since that act as natural intermediate hosts of the parasite Schistosoma mansoni, which causes schistosomiasis. Within this kind of mollusks, three species are considered natural hosts of the parasite, Biomphalaria glabrata, B. stramineaand B. tenagophila. The profile of usceptibility to S. mansoni infection within the genre is very varied and many studies seek to elucidate the dynamics of host-parasite relationship intermediary in order to create new disease control easures. Therefore, this study aims to determine the two-dimensional profile of proteins that may be involved in the immune response against S. mansonicomparing two species with different susceptibility profiles B. glabrata, B. straminea and a refractory to S. mansoni, B. straminea R3. For that, the snails of each species were divided into two groups: Infected exposed to iracidia of S. mansoni; and control, subjected to stress the miracidia free infection process. The hemolymph was removed 24 hours after exposure. It was made the total protein extract and determined the concentration of total protein for each group investigated. Proteins were separated by two-dimensional electrophoresis was obtained where the isoelectric point and molecular weight of all the spots in the gels...
Subject(s)
Animals , Biomphalaria/immunology , Host-Parasite Interactions , Schistosoma mansoni/pathogenicity , Antigens, Helminth/analysis , Biomphalaria/parasitology , Case-Control Studies , Electrophoresis, Gel, Two-Dimensional/methods , Hemocytes , Hemolymph/cytology , ProteomicsABSTRACT
The first and second [two] dimensional gel electrophoresis has a broad protein resolution power. It was used to separate and identify cobra venom proteome. The importance of characterizing venom proteins contents from the Egyptian elapidae, specifically neurotoxins, is based on the need to produce effective anti-venom. About 30-55distinct protein spots were identified on silver stained two-dimensional gels. Around two-thirds of the venom proteins displayed low a molecular weight and a migration into hydrophobic side. The venoms from Naja haja and Naja nigricollus showed 45-55 spots, while Walternnesia aegyptia had less [31-37] spots. The commercial prepared polyclonal antivenom had a strong signal for anionic and cationic venom protein spots with molecular weight 20-115 kDa. However, it showed weak or non immunoreactivity toward anionic low molecular weight spots [2.5-15kDa]. These results suggest the need to change the immunization schedule to include low molecular weight toxin-proteomes as separate dose or sequester injection
Subject(s)
Animals , Electrophoresis, Gel, Two-Dimensional/methods , Antivenins , Proteome/pharmacology , Elapid Venoms/analysisABSTRACT
PURPOSE: Recent evidence shows that nitric oxide (NO) may exhibit both pro-cancer and anti-cancer activities. The present study aimed to determine the differentially expressed proteins in NO-treated NIH/3T3 fibroblasts in order to investigate whether NO induces proteins with pro-cancer or anti-cancer effects. MATERIALS AND METHODS: The cells were treated with 300 microM of an NO donor 3,3-bis-(aminoethyl)-1-hydroxy-2-oxo-1-triazene (NOC-18) for 12 h. The changed protein patterns, which were separated by two-dimensional electrophoresis using pH gradients of 4-7, were conclusively identified by matrix-assisted laser desorption/ionization-time of flight mass spectrometry (MALDI-TOF MS) analysis of the peptide digests. RESULTS: Seventeen differentially expressed proteins were identified in NOC-18-treated cells. Nine proteins [vinculin protein, keratin 19, ubiquitous tropomodulin, F-actin capping protein (alpha1 subunit), tropomyosin 3, 26S proteasome-associated pad1 homolog, T-complex protein 1 (epsilon subunit) N(G)-dimethylarginine dimethylaminohydrolase, and heat shock protein 90] were increased and eight proteins (heat shock protein 70, glucosidase II, lamin B1, calreticulin, nucleophosmin 1, microtubule-associated protein retinitis pigmentosa/end binding family member 1, 150 kD oxygen-regulated protein precursor, and heat shock 70-related protein albino or pale green 2) were decreased by NOC-18 in the cells. Thirteen proteins are related to the suppression of cancer cell proliferation, invasion, and metastasis while two proteins (heat shock protein 90 and N(G)-dimethylarginine dimethylaminohydrolase) are related to carcinogenesis. The functions of 150 kD oxygen-regulated protein precursor and T-complex protein 1 (epsilon subunit) are unknown in relation to carcinogenesis. CONCLUSION: Most proteins differentially expressed by NOC-18 are involved in inhibiting cancer development.
Subject(s)
Animals , Humans , Mice , Electrophoresis, Gel, Two-Dimensional/methods , Fibroblasts/metabolism , HSP70 Heat-Shock Proteins , NIH 3T3 Cells , Neoplasms/metabolism , Nitric Oxide Donors , Nitroso Compounds , Proteins/analysis , Proteomics/methods , Spectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationABSTRACT
OBJECTIVE: The aim of this study is to determine a protocol of gingival crevicular fluid protein extraction used for the first dimension of 2-DE gels. It also aims at conducting a review on the current candidates for protein markers of this pathology, all of which may be used to prevent the disease. METHODS: Gingival crevicular fluid was collected from two groups of 60 patients each, with and without external root resorption. Samples were extracted by means of various methods of protein extraction. SDS-PAGE gels were used to assess the quality of the method which was subsequently tested during isoelectric focusing of 2-DE gels taken from samples of patients with and without the disease. RESULTS: Milli-Q ultrapure ice cold water, without precipitation for gingival crevicular fluid protein extraction, proved the method with greatest sharpness to detect protein bands. Additionally, it allowed two-dimensional electrophoresis to be performed. CONCLUSION: The new protein extraction protocol does not interfere in isoeletric focusing of 2-DE gels. Furthermore, it provides the greatest sharpness in detecting protein bands of SDS-PAGE gels. This will allow mapping and searching of new external root resorption markers, particularly due to the difficulty in carrying out molecular tests with the current candidates for protein markers. .
OBJETIVO: o objetivo desse trabalho foi determinar o protocolo de extração proteica do fluido crevicular gengival, que pudesse ser utilizado para a realização da primeira dimensão dos géis 2-DE, bem como fazer uma revisão dos atuais candidatos a marcadores proteicos dessa patologia que podem ser utilizados na prevenção dessa doença. MÉTODOS: foi coletado o fluido crevicular gengival de dois grupos de 60 pacientes, com e sem a reabsorção radicular externa. As amostras foram extraídas por diversos métodos de extração proteica e utilizados géis SDS-PAGE para aferir a qualidade do método, que posteriormente foi testado durante a realização da focalização isoelétrica dos géis 2-DE, de amostras de pacientes com e sem a patologia. RESULTADOS: a utilização de água Milli-Q gelada ultrapura, sem nenhuma precipitação para a extração proteica do fluido crevicular gengival, foi o método com maior nitidez das bandas proteicas, além de permitir a realização da eletroforese bidimensional. CONCLUSÕES: o novo protocolo de extração proteica não interfere na focalização durante a realização dos géis 2-DE, além de maior nitidez na resolução das bandas proteicas dos géis SDS-PAGE. Isso permitirá o mapeamento e busca de novos marcadores da reabsorção radicular externa, tendo em vista a dificuldade de realização de testes moleculares com os atuais candidatos a marcadores proteicos. .
Subject(s)
Adolescent , Adult , Female , Humans , Male , Young Adult , Extracellular Matrix Proteins/analysis , Gingival Crevicular Fluid/chemistry , Root Resorption/metabolism , Biomarkers/analysis , Electrophoresis, Gel, Two-Dimensional/methods , Electrophoresis, Polyacrylamide Gel/methods , Isoelectric Focusing/methods , Phosphoproteins/analysis , Sialoglycoproteins/analysis , Water/chemistryABSTRACT
A doença de Chagas foi incialmente descrita em 1090 e após mais de 100 anos de investigações sobre essa doença, ainda pouco se sabe sobre os mecanismos ativados no parasita durante sua adesão e invasão à célula hospedeira. Glicoproteínas de massa molecular de 85kDa localizadas na membrana do parasita foram identificadas como principais elementos responsáveis pela interação com o hospedeiro. Essas proteínas também são capazes de se ligar a elementos da matriz extracelular (ECM) da célula hospedeira e esse evento parece ser crucial para modulação da adesão e invasão do parasita e consequente avanço da infecção. Embora diferentes elementos tenham sido identificados no hospedeiro como componentes da via de resposta a adesão ao parasita, as modificações induzidas pela sua ligação ao hospedeiro é ainda pouco conhecida. Modificações pós-traducionais de proteínas, incluindo a fosforilação, têm sido utilizadas por diferentes organismos na transdução de sinais extracelulares. Dessa forma, a identificação de proteínas diferencialmente fosforiladas durante a adesão de tripomastigotas de T. cruzi a ECM, fibronectina e laminina foi o objetivo dessa tese. Tripomastigotas foram incubados com ECM, fibronectina-, laminina- ou BSA- previamente aderidos em placas de cultura de células. Em seguida, os parasitas foram coletados e suas proteínas extraídas e separadas por 2D-PAGE. Os géis de eletroforese foram corados com Pro-Q Diamond (para identifiicação de proteínas fosforiladas) e posteriormente com coomassie colloidal (identificação de proteínas totais). Os spots com diferença significativa na coloração com Pro-Q Diamond (p< 0,05) foram identificados por LC-MS/MS. 54 spots foram diferencialmente fosforilados durante a adesão dos parasitas a ECM, dos quais 39 sofreram um aumento da intensidade de fosforilação e 15 uma redução. Já dos 43 spots diferencialmente fosforilados durante incubação com laminina, 16 aumentaram a fosforilação enquanto 27 sofreram redução da intensidade de fosforilação. Por fim, após incubação com fibronectina, dos 50 spots selecionados, 15 spots sofreram aumento da intensidade de fosforilação e 35 sofreram redução. Após identificação dos spots, as modificações por fosforilação/desfosforilação de proteínas de função desconhecida (hypothetical proteins), proteínas do citoesqueleto, proteínas do choque térmico (HSPs) e proteínas componentes do proteassomo do parasita foram as mais evidentes. A validação por immonoblotting de algumas proteínas identificadas indicou que a desfosforilação de proteínas do citoesqueleto junto com a fosforilação de proteínas do choque térmico são os principais eventos durante a resposta do parasita a adesão a ECM e a seus elementos. Além disso, a desfosforilação de ERK 1/2 observada indicou uma inativação dessa proteína em parasitas aderidos a fibronectina e laminina. Os resultados obtidos nessa tese sugerem uma provável relação entre modificações de proteínas do citoesqueleto e HSPs com a capacidade de internalização dos parasitas na célula hospedeira
The Chagas disease was firstly described in 1909. After more than 100 years of investigation about this sickness much less is known about the mechanism triggered in the parasite during the adhesion and invasion to the host cell. 85kDa glycoproteins were identified as the major element responsible for the attachment to the host. In addition, these proteins are able to binding to extracellular matrix elements and host cytoskeletal proteins and it event appears to be an essential step in host cell invasion by T. cruzi. Although downstream signal modifications have been studied in host cells upon parasite binding, the molecular changes induced on the parasite by ligand binding are largely unknown. Since post-translational modification of proteins by phosphorylation is one of the most important mechanisms employed by organisms to transduce external signals, identification of proteins modified upon adhesion of T. cruzi trypomastigotes to ECM, laminin and fibronectin of the host cell was pursued. Trypomastigotes (Y strain) were incubated with ECM, laminin-, fibronectin- or BSA-coated surfaces, followed by 2D-PAGE stained with Pro-Q Diamond (phosphorylated protein detection) followed by colloidal coomassie stain (total protein identification). Proteins with significant differences in Pro-Q Diamond stain (p<0.05) were identified by LC-MS/MS. 54 spots were differentially phosphorylated during parasite adhesion to ECM, in which 39 spots have increased their phosphorylation level and 15 have decreased their phosphorylation. From the 43 spots presenting modification to the phosphorylation on incubation with laminin, 16 corresponded to cases of increase of phosphorylation and 27 to cases of dephosphorylation. After incubation with fibronectin: from the 50 spots selected, 15 corresponded to increase of phosphorylation and 35 to dephosphorylation. The results show phosphorylation/dephosphorylation modifications of unknown proteins, parasite cytoskeletal proteins (alpha and beta tubulin and paraflagellar-rod proteins), heat shock proteins and proteasome proteins. The validation by immunoblotting of proteins and their phosphorylation intensities indicates that cytoskeletal protein dephosphorylation in addition to heat shock proteins phosphorylation are the most important event during the trypomastigotes adhesion to the ECM. Looking for downstream signaling, dephosphorylation of ERK1/2 was also shown in trypomastigotes adhered to fibronectin or laminin, suggesting its inactivation. Thereby, those results suggest a possible correlation between cytoskeletal proteins and HSPs modification and the ability of parasite to internalize into host cells
Subject(s)
Extracellular Matrix/classification , Trypanosoma cruzi/parasitology , Cytoskeleton/metabolism , Electrophoresis, Gel, Two-Dimensional/methods , Glycoproteins/analysis , Host Cell Factor C1/analysis , Host-Parasite Interactions , Mass Spectrometry/methods , Phosphorylation/drug effectsABSTRACT
Hemophilia A is an X-linked congenital bleeding disorder caused by Factor VIII deficiency. Different mutations including point mutations, deletions, insertions and inversions have been reported in the FVIII gene, which cause hemophilia A. In the current study, with the use of conformational sensitive gel electrophoresis (CSGE) analysis, we report a novel 1-nt deletion in the A6 sequence at codons 1328-1330 (4040-4045 nt delA) occurring in exon 14 of the FVIII gene in a seven-year-old Iranian boy with severe hemophilia A. This mutation that causes frameshift and premature stop-codon at 1331 has not previously been reported in the F8 Hemophilia A Mutation, Structure, Test and Resource Site (HAMSTeRS) database.
Subject(s)
Child , Electrophoresis, Gel, Two-Dimensional/methods , Exons/genetics , Factor VIII/genetics , Humans , MaleABSTRACT
Crystallins are a diverse group of proteins that constitute nearly 90% of the total soluble proteins of the vertebrate eye lens and these tightly packed crystallins are responsible for transparency of the lens. These proteins have been studied in different model and non-model species for understanding the modifications they undergo with ageing that lead to cataract, a disease of protein aggregation. In the present investigation, we studied the lens crystallin profile of the tropical freshwater catfish Rita rita. Profiles of lens crystallins were analyzed and crystallin proteome maps of Rita rita were generated for the first time. A-crystallins, member of the -crystallin family, which are molecular chaperons and play crucial role in maintaining lens transparency were identified by 1-and 2-D immunoblot analysis with anti-A-crystallin antibody. Two protein bands of 19-20 kDa were identified as A-crystallins on 1-D immunoblots and these bands separated into 10 discrete spots on 2-D immunoblot. However, anti-B-crystallin and antiphospho-B-crystallin antibodies were not able to detect any immunoreactive bands on 1- and 2-D immunoblots, indicating B-crystallin was either absent or present in extremely low concentration in Rita rita lens. Thus, Rita rita -crystallins are more like that of the catfish Clarias batrachus and the mammal kangaroo in its A- and B-crystallin content (contain low amount from 5-9% of aB-crystallin) and unlike the dogfish, zebrafish, human, bovine and mouse -crystallins (contain higher amount of B-crystallin from 25% in mouse and bovine to 85% in dogfish). Results of the present study can be the baseline information for stimulating further investigation on Rita rita lens crystallins for comparative lens proteomics. Comparing and contrasting the -crystallins of the dogfish and Rita rita may provide valuable information on the functional attributes of A- and B-isoforms, as they are at the two extremes in terms of A-and B-crystallin content.
Subject(s)
Animals , Cataract/pathology , Catfishes/metabolism , Cattle , Crystallins/isolation & purification , Crystallins/metabolism , Electrophoresis, Gel, Two-Dimensional/methods , Humans , Macropodidae/metabolism , Mice , Proteome/metabolism , alpha-Crystallin A Chain/isolation & purification , alpha-Crystallin A Chain/metabolism , alpha-Crystallin B Chain/isolation & purification , alpha-Crystallin B Chain/metabolism , alpha-Crystallins/isolation & purification , alpha-Crystallins/metabolismABSTRACT
Innate immunity plays a key role in the control of microbial infections in both vertebrates and invertebrates. Haemolymph samples from Shistocerca gregaria, obtained after Trypanosoma brucei brucei challenge were analyzed for their protein profiles using SDS and 2D-PAGE and also evaluated for antitrypanosomal activity in vitro. Protein induction was found to increase with time, peaking at about 18 hours. In SDS-PAGE, the intensity levels of five polypeptides were found to vary from prechallenge levels. Further analysis of the polypeptides on 2D-PAGE showed variations in their induction pattern with some being induced, upregulated or suppressed with time of induction. Samples collected from insects challenged with parasites followed by sugars, D-glucosamine had the highest inhibitory effect on the level of protein induction while D-galactose had the least effect. When screened for trypanolytic activity against T. brucei brucei, the samples had pronounced antitrypanosomal activity which peaked with the 18 hour sample. Antibodies raised against Glossina proteolytic lectin [Gpl], showed no cross-reactivity to Shistocerca gregaria induced haemolymph proteins in Western blots. Antitrypanosoma proteins induced during vector-parasite interaction have the potential of being used to modulate tsetse fly vectorial capacity
Subject(s)
Insect Proteins/analysis , Lectins/analysis , Trypanosoma brucei brucei , Hemolymph , Electrophoresis, Gel, Two-Dimensional/methodsABSTRACT
Glucantime[R] is the first- line drug for the treatment of all forms of leishmaniasis. Unfortunately, the prevalence of parasites becoming resistant to Glucantime[R] is increasing in several parts of the world including Iran. As protein is the most important target for drugs in response to a variety of signals including drugs so, it seems expression protein patterns in sensitive and resistant Leishmania parasites could greatly help us about the mechanisms of responses to antileishmanial drugs. In this study, we used 2-dimentional gel electrophoresis [2-DE] method to determine protein expression profiles between drug [Glucantime[R]] sensitive and resistant Leishmania tropica isolated from Iranian an throponotic cutaneous leishmaniasis [ACL] patients. We used from the two confirmed genetically of Glucantime[R] sensitive [Mash-4] and resistant [Mash-927] field strains of L. tropica, isolated from ACL patients in north eastern Iran. The two Leishmania isolates were cultured, promastigotes were harvested followed by protein extraction using TCA/Aceton to study protein profiling, 2-DE was done and gels stained with silver nitrate. At least 2236 distinct protein spots were detected. Twelve spots out of them, showed significant changes in expression in resistant compared to sensitive isolates. Of these, 11 protein spots were up- and one was down-regulated. This preliminary study has showed that a number of proteins differentially expressed in drug [Glucan-time [R]] resistance L. tropica and probably the role of these proteins are increasing the parasite resistance against the drug and delay in cell death
Subject(s)
Humans , Organometallic Compounds , Leishmaniasis/drug therapy , Leishmania tropica/genetics , Electrophoresis, Gel, Two-Dimensional/methods , Gene Expression ProfilingABSTRACT
Estudou-se o perfil das proteínas da membrana externa (PME) da Leptospira interrogans sorovariedade Hardjoprajitno por meio da eletroforese bidimensional. Foram utilizadas técnicas de extração das PME com Triton x114 e precipitação com acetona. Os géis foram corados com nitrato de prata e as imagens analisadas para determinação da massa molecular das proteínas detectadas. Foram visualizadas 35 bandas protéicas, sendo que cinco delas se destacaram por estarem em maior quantidade: 22,54KDa (LipL22), 30/26KDa (LipL32), 34,41KDa (PME34), 42,75KDa (LipL41) e 58,59KDa (LipL63).
The protein profile of the outer membrane of Leptospira interrogans serovar Hardjoprajitno was determined by two-dimensional gel electrophoresis. The outer membrane was extracted with Triton x 114 and the proteins were precipitated with acetone. The images were analyzed for the determination of the molecular weight of the detected proteins. Thirty-five spots for the proteins that are predominant in the outer membrane of this Leptospira were observed and five proteins were found in higher quantities: 22.54KDa (LipL22), 30/26KDa (LipL32), 34.41KDa (PME34) (2), 42.75KDa (LipL41), and 58.59KDa (LipL63).
Subject(s)
Electrophoresis, Gel, Two-Dimensional/methods , Leptospira interrogans/ultrastructure , Membrane Proteins/classification , Membrane Proteins/chemistryABSTRACT
The outcome of Leishmania infections is determined by both the parasite species and the host genetic makeup. While much has been learned regarding immune responses to this parasite, our knowledge on parasite-derived factors is limited. The recent completion of the L. major and L. infantum genome sequence projects and concurrent advancement in proteomics technology would greatly accelerate the search for novel Leishmania proteins. Using a proteomics-based approach to study species-specific Leishmania proteins, we developed high-resolution, broad pH (3-10) two-dimensional gel electrophoresis (2-DE) separations to determine protein-expression profiles between highly infectious forms of the parasitic species L. amazonensis (New World) and L. major (Old World). Approximately 1,650 and 1,530 distinct protein spots were detected in the L. amazonensis and L. major gels, respectively. While a vast majority of the spots had similar distribution and intensity, a few were computationally defined as preferentially expressed in L. amazonensis in comparison to L. major, or vice versa. These data attest to the feasibility of establishing a 2-DE-based protein array for inter-species profiling of Leishmania proteins and provide the framework for future design of proteome studies of Leishmania.
Subject(s)
Animals , Mice , Electrophoresis, Gel, Two-Dimensional/methods , Leishmania major/chemistry , Leishmania mexicana/chemistry , Proteome/analysis , Protozoan Proteins/analysis , Feasibility Studies , Gene Expression Regulation , Leishmania major/genetics , Leishmania mexicana/genetics , Mass Spectrometry , Mice, Inbred BALB C , Proteomics/methodsABSTRACT
The different sera proteomic components between uremia patients and normal subjects were studied through two-dimensional gel electrophoresis technique. Immobilized pH gradient two-dimensional polyacrylamide gel electrophoresis (2DE), silver staining, ImageMaster 2D 5.0 analysis software, matrix assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF-TOF-MS) and IPI human database searching were used to separate and identify the proteome of the sera from the patients with uremia. The results showed that satisfactory 2DE patterns of the serum proteins were obtained. Twenty-six protein spots showed significant difference in quantity in uremia patients, and 20 protein spots were identified by MALDI-TOF-TOF-MS. It was concluded that good reproducibility could be obtained by applying immobilized pH gradient 2DE to separate and identify the proteome in serum, which provided the foundation for the further study on uremia toxins pertaining to protein.
Subject(s)
Blood Protein Electrophoresis , Blood Proteins/analysis , Case-Control Studies , Electrophoresis, Gel, Two-Dimensional/methods , Proteome/analysis , Proteome/chemistry , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods , Uremia/bloodABSTRACT
Human follicular fluid (HFF) includes various biologically active proteins which can affect follicle growth and oocyte fertilization. Thus far, these proteins from mature follicles in human follicular fluid have been poorly characterized. Here, two-dimensional polyacrylamide gel electrophoresis (2-DE) with matrix-assisted laser desorption/ionization-mass spectrometry (MALDI-MS) was used to identify new proteins in HFF. Mature follicular fluids were obtained from five females after oocyte collection during in vitro fertilization (IVF). We directly rehydrated HFF samples, obtained high-resolution 2-DE maps, and processed them for 2-DE and MALDI-MS. One hundred eighty spots were detected and 10 of these spots were identified. By the 2-DE database, six of them had been reported, as proteins already existing in HFF. Hormone sensitive lipase (HSL), Unnamed protein product 1 (UPP1), Unnamed protein product 2 (UPP2), and apolipoprotein A-IV precursor were newly detected. HSL and apolipoprotein A-IV participate in lipid metabolism. UPP1 has a homology with selenocysteine lyase. We found by RT-PCR that these genes are expressed from human primary granulosa cells. The proteins identified here may emerge as potential candidates for specific functions during folliculogenesis, hormone secretion regulation, or oocyte maturation. Further functional analysis of these proteins is necessitated to determine their biological implications.
Subject(s)
Adult , Female , Humans , Electrophoresis, Gel, Two-Dimensional/methods , Follicular Fluid/chemistry , Gene Expression , Granulosa Cells/metabolism , Ovarian Follicle/chemistry , Proteins/analysis , RNA, Messenger/genetics , Reverse Transcriptase Polymerase Chain Reaction , Spectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationABSTRACT
Identification of expressed protein profiles and antigenic determination are some of the most challenging aspects of proteomics. Two-dimensional gel electrophoresis (2-DE) combined with immunoblot analysis were employed to study the N. caninum proteome. Protein sample preparation was carried out by first conducting sonication, followed by adding lysis buffer containing 7M urea plus 2M thiourea to the purified tachyzoites in order to complete disruption. A total of 335 differentially expressed protein spots were detected using pH 4-7 IPG strip (7 cm) that were run in a 56 kVh isoelectric focusing (IEF) system. Of the spots analyzed, 64 were identified as antigenic spots on immunoblot profile. Major antigenic spots appeared at 65 kDa (pI 5.2-5.3), 51 kDa (pI 5.5), 38 kDa (pI 5.1), 33 kDa (pI 4.4), 29 kDa (pI 5.6) and 15.5 kDa (pI 5.0) were observed to be significantly distinct compared to the rest of the antigenic spots. The results indicate that combination of 2-DE and immunoblotting methods were thought as very useful tools in defining both proteins and antigens of N. caninum tachyzoites. Additionally, present 2-DE profiles may be valuable in further proteomic approaches and study of the pathogen.